科研博士后（逸仙博士后）

电子邮箱：panyf26@mail.sysu.edu.cn
Google Scholar：https://scholar.google.com/citations?user=Zhlg9QkAAAAJ&hl=zh-CN

教育背景：
2021-2025：复旦大学，生命科学学院，生态学（卓博计划），获得理学博士学位
2016-2021：复旦大学，公共卫生学院，预防医学（五年制），获得医学学士学位

科研与学术工作经历：
2025.8-至今：中山大学医学院 科研博士后（逸仙博士后项目）

研究方向：
1.病毒生态基因组学
2.人工智能

项目经历：
1. 国家自然科学基金青年学生基础研究项目，“利用深度学习预测RNA病毒的人兽共患风险”，2024-2025，主持（30万元）
2. 国家自然科学基金面上项目，“蚊虫体内微生物全感染组及其相互作用研究”，参与
3. 国家自然科学基金专项项目，“通过新一代生命组学技术和人工智能算法揭示人类病毒组”，参与

著作：
2025
Pan, Y.-F.*, He, Y.*, Liu, Y.-Q., Shan, Y.-T., Liu, S.-N., Liu, X., Pan, X., Bai, Y., Xu, Z., & Wang, Z. (2025). Predicting the Evolutionary and Functional Landscapes of Viruses with a Unified Nucleotide-Protein Language Model: LucaVirus. bioRxiv. https://doi.org/10.1101/2025.06.14.659722（共同第一兼通讯作者）
Fang, S., Zhu, L., Bai, S., Tian, W., Pan, Y., Zhang, S., Bi, R., Liang, M., Luo, G., & Chen, X. (2025). Year-round infectome profiling of acute febrile respiratory illness unveiled complex epidemiological dynamics postlifting of COVID-19 restrictions. International Journal of Infectious Diseases, 155, 107896. https://doi.org/10.1016/j.ijid.2024.107896
Feng, Y., Kuang, G., Pan, Y., Wang, J., Yang, W., Wu, W.-C., Pan, H., Wang, J., Han, X., & Yang, L. (2025). Small mammals in a biodiversity hotspot harbor viruses of emergence risk. National Science Review, 12(6), nwae463. https://doi.org/10.1093/nsr/nwae463
He, Y., Fang, P., Shan, Y., Pan, Y., Wei, Y., Chen, Y., Chen, Y., Liu, Y., Zeng, Z., & Zhou, Z. (2025). Generalized biological foundation model with unified nucleic acid and protein language. Nature Machine Intelligence, 1–12.
Kuang, G., Yang, T., Yang, W., Wang, J., Pan, H., Pan, Y., Gou, Q.-Y., Wu, W.-C., Wang, J., & Yang, L. (2025). Infectome analysis of bat kidneys from Yunnan province, China, reveals novel henipaviruses related to Hendra and Nipah viruses and prevalent bacterial and eukaryotic microbes. PLoS Pathogens, 21(6), e1013235. https://doi.org/10.1371/journal.ppat.1013235
Liu, X., Kong, J., Shan, Y., Yang, Z., Miao, J., Pan, Y., Luo, T., Shi, Z., Wang, Y., & Gou, Q. (2025). SegFinder: an automated tool for identifying complete RNA virus genome segments through co-occurrence in multiple sequenced samples. Briefings in Bioinformatics, 26(4), bbaf358. https://doi.org/10.1093/bib/bbaf358

2024
Pan, Y.-F.*, Zhao, H.*, Gou, Q.-Y.*, Shi, P.-B., Tian, J.-H., Feng, Y., Li, K., Yang, W.-H., Wu, D., & Tang, G. (2024). Metagenomic analysis of individual mosquito viromes reveals the geographical patterns and drivers of viral diversity. Nature Ecology & Evolution, 8(5), 947–959.（共同第一作者）https://doi.org/10.1038/s41559-024-02388-z
Wu, W.-C.*, Pan, Y.-F.*, Zhou, W.-D., Liao, Y.-Q., Peng, M.-W., Luo, G.-Y., Xin, G.-Y., Peng, Y.-N., An, T., & Li, B. (2024). Meta-transcriptomic analysis of companion animal infectomes reveals their diversity and potential roles in animal and human disease. mSphere, 9(8), e00439-24.（共同第一作者）https://doi.org/10.1128/msphere.00439-24
Yang, Z., Shan, Y., Liu, X., Chen, G., Pan, Y., Gou, Q., Zou, J., Chang, Z., Zeng, Q., & Yang, C. (2024). VirID: Beyond virus discovery—An integrated platform for comprehensive RNA virus characterization. Molecular Biology and Evolution, 41(10), msae202. https://doi.org/10.1093/molbev/msae202
Hou, X., He, Y., Fang, P., Mei, S.-Q., Xu, Z., Wu, W.-C., Tian, J.-H., Zhang, S., Zeng, Z.-Y., & Gou, Q.-Y. (2024). Using artificial intelligence to document the hidden RNA virosphere. Cell, 187(24), 6929–6942.e16. https://doi.org/10.1016/j.cell.2024.10.038

2023
Wang, J.*, Pan, Y.-F.*, Yang, L.-F.*, Yang, W.-H., Lv, K., Luo, C.-M., Wang, J., Kuang, G.-P., Wu, W.-C., & Gou, Q.-Y. (2023). Individual bat virome analysis reveals co-infection and spillover among bats and virus zoonotic potential. Nature Communications, 14(1), 4079. https://doi.org/10.1038/s41467-023-39828-5（共同第一作者）
Pan, Y., Liu, M., Sosa, A., Li, B., Shi, M., & Pan, X. (2023). Hierarchical metacommunity structure of fungal endophytes. New Phytologist, 239(4), 1464–1474. https://doi.org/10.1111/nph.18956（第一作者）
Chen, L.*, Pan, Y.*, Pan, X., Yu, L., Sosa, A., Yang, J., & Li, B. (2023). From competition to cooperation: Kin selection against selfish shade avoidance behaviour promotes plant invasions. Journal of Ecology, 111(3), 645–654. https://doi.org/10.1111/1365-2745.14064（共同第一作者）
Sun, Y.-C., Pan, Y.-F., Liu, M., & Pan, X.-Y. (2023). The specialist-to-generalist ratio affects growth and defense strategy of invasive plant Alternanthera philoxeroides. Journal of Ecology, 111(7), 1541–1552. https://doi.org/10.1111/1365-2745.14128

2022
Shen, S.-Y., Pan, Y.-F., Chen, L.-R., Tu, Y.-L., & Pan, X.-Y. (2022). Plant-soil feedbacks differ between native and introduced populations of Alternanthera philoxeroides. Plant and Soil, 478(1–2), 489–501. https://doi.org/10.1007/s11104-022-05527-5

2021
Liu, M.*, Pan, Y.*, Pan, X., Sosa, A., Blumenthal, D. M., Van Kleunen, M., & Li, B. (2021). Plant invasion alters latitudinal pattern of plant-defense syndromes. Ecology, 102(12), e03511. https://doi.org/10.1002/ecy.3511（共同第一作者）
Yang, Y., Liu, M., Pan, Y., Huang, H., Pan, X., Sosa, A., Hou, Y., Zhu, Z., & Li, B. (2021). Rapid evolution of latitudinal clines in growth and defence of an invasive weed. New Phytologist, 230(2), 845–856. https://doi.org/10.1111/nph.17242